Package: nat.templatebrains 1.2

Gregory Jefferis

nat.templatebrains: NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains

Extends package 'nat' (NeuroAnatomy Toolbox) by providing objects and functions for handling template brains.

Authors:Gregory Jefferis [aut, cre], James Manton [aut]

nat.templatebrains_1.2.tar.gz
nat.templatebrains_1.2.zip(r-4.5)nat.templatebrains_1.2.zip(r-4.4)nat.templatebrains_1.2.zip(r-4.3)
nat.templatebrains_1.2.tgz(r-4.4-any)nat.templatebrains_1.2.tgz(r-4.3-any)
nat.templatebrains_1.2.tar.gz(r-4.5-noble)nat.templatebrains_1.2.tar.gz(r-4.4-noble)
nat.templatebrains_1.2.tgz(r-4.4-emscripten)nat.templatebrains_1.2.tgz(r-4.3-emscripten)
nat.templatebrains.pdf |nat.templatebrains.html✨
nat.templatebrains/json (API)
NEWS

# Install 'nat.templatebrains' in R:
install.packages('nat.templatebrains', repos = c('https://natverse.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/natverse/nat.templatebrains/issues

Datasets:
  • FCWB.demo - Sample template brain: FlyCircuit Whole Brain

On CRAN:

bridging-registrationsimage-registrationnatverseneuroanatomyneuroanatomy-toolbox

22 exports 3 stars 1.47 score 53 dependencies 2 mentions 37 scripts 253 downloads

Last updated 1 years agofrom:a788901213. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 10 2024
R-4.5-winNOTESep 10 2024
R-4.5-linuxNOTESep 10 2024
R-4.4-winOKSep 10 2024
R-4.4-macOKSep 10 2024
R-4.3-winOKSep 10 2024
R-4.3-macOKSep 10 2024

Exports:add_reg_foldersadd_reglistall_templatebrainsallreg_dataframeas.templatebrainbridging_graphbridging_sequencedisplay_slicedownload_reg_repoextra_reg_foldersfit_xformfit_xform_brainguess_templatebrainis.templatebrainlocal_reg_dir_for_urlmirror_brainregtemplateregtemplate<-shortest_bridging_seqtemplatebrainupdate_reg_reposxform_brain

Dependencies:backportsbase64encBHbslibcachemcheckmateclicpp11crayondigestevaluatefastmapfilehashfontawesomefsgluehighrhmshtmltoolshtmlwidgetsigraphjquerylibjsonliteknitrlatticelifecyclemagrittrMatrixmemoisemimenabornatnat.utilspbapplypkgconfigplyrprettyunitsprogressR6rappdirsRcppRcppEigenrglrlangrmarkdownsassstringistringrtinytexvctrsxfunyamlzip

Readme and manuals

Help Manual

Help pageTopics
Set or list local folders containing registrations for nat.templatebrainsadd_reg_folders extra_reg_folders
Add reglist object describing a bridging/mirroring registrationadd_reglist
Find all template brains or those matching a given image volumeall_templatebrains guess_templatebrain
Make data.frame with details of all registrationsallreg_dataframe
Use image file or other object to initialise template brainas.templatebrain as.templatebrain.character as.templatebrain.im3d as.templatebrain.templatebrain
Make or query connected graph of bridging registrationsbridging_graph shortest_bridging_seq
Find sequence of one or more bridging registrationsbridging_sequence
Display an image slice in 3Ddisplay_slice
Download and register git repository containing registrationsdownload_reg_repo
Sample template brain: FlyCircuit Whole BrainFCWB.demo
Fit affine or thin plate spline transform to arbitrary transformationfit_xform
Fit a single transform to a bridging registration between brainsfit_xform_brain
Standard local checkout location for extra registration directorieslocal_reg_dir_for_url
Mirror 3D object around a given axis, optionally using a warping registrationmirror_brain
Plot 3D surface of a template brainplot3d.templatebrain
Get or set the registration template space in which an object livesregtemplate regtemplate<-
Construct templatebrain object for an image registration templatetemplatebrain
Template brain methodsas.character.templatebrain as.im3d.templatebrain boundingbox.templatebrain dim.templatebrain is.templatebrain origin.templatebrain print.templatebrain templatebrain-meths voxdims.templatebrain
Update local copy of git repository containing registrationsupdate_reg_repos
Transform 3D object between template brainsxform_brain